Continue staging with scripting (pysiril).
It looks it doesn’t support long paths )all sub directory created in advance)
For example convert cut filename extension of filename of symlink and it looks on 127 symbols:
C:\preprocessed_seq\NGC2246_06-31-57_N04-58-35_ATR3CMOS26000KMA_FLEN910_ANGL5\NGC2246_G_G100_OFS250_1x1_15s\pp_sequince_00001.f
Command was:
convert pp_sequince -out=c:/preprocessed_seq\NGC2246_06-31-57_N04-58-35_ATR3CMOS26000KMA_FLEN910_ANGL5\NGC2246_G_G100_OFS250_1x1_15s