I took a look at your raw files and identified couple of problems.
Firstly, lots of parallax which leads to suboptimal stitching result. There will be visible seams in the final panorama. The images were probably taken hand-held?
Secondly, veiling flare in the second topmost image. Some kind of protective filter?
Using auto exposure to cover the dynamic range of the scene was a good choice in this case. Single, well-exposed image covers the brightest part of the panorama and the darkest parts can simply be brightened to match. There will be some additional noise, but that’s not much of a problem.
Anyhow, I converted the NEF files using Raw Therapee, using very neutral profile (only white balance was altered) and stitched the images in Hugin without many problems. The exposure differences between the images were leveled and this was the result: https://dl.dropboxusercontent.com/u/168254285/web/hugin-nd750_a4076-a4079.jpg
The panorama was then opened in RT and auto exposure, tonemapping and couple smaller adjustments were enabled, and here is the result of that: https://dl.dropboxusercontent.com/u/168254285/web/nd750_a4076-nd750_a4079-rt.jpg