Tried same stacking with same files from a debian live where I compiled from source the latest siril version.
Result with 117 files:
12:53:40: Pixel rejection in channel #0: 0.040% - 5.473%
12:53:40: Pixel rejection in channel #1: 0.017% - 4.013%
12:53:40: Pixel rejection in channel #2: 0.039% - 5.104%
12:53:40: Rejection stacking complete. 117 images have been stacked.
Result with 292 files:
tarting stacking…
13:36:58: Pixel rejection in channel #0: 0.034% - 6.214%
13:36:58: Pixel rejection in channel #1: 0.019% - 5.177%
13:36:58: Pixel rejection in channel #2: 0.036% - 5.887%
13:36:58: Rejection stacking complete. 292 images have been stacked.
13:36:58: Integration of 292 images:
13:36:58: Pixel combination … average
13:36:58: Normalization … additive + scaling
13:36:58: Pixel rejection … Winsorized sigma clipping
13:36:58: Rejection parameters … low=4.000 high=3.000
13:36:58: Background noise value (channel: #0): 0.119 (1.809e-06)
13:36:58: Background noise value (channel: #1): 0.104 (1.580e-06)
13:36:58: Background noise value (channel: #2): 0.111 (1.697e-06)
So indeed it has something to do with the windows version of siril. I tried on windows 10 the same amount of files and beginning at around 100 lights rejection values turned negative. Do you still would need that I upload the files? they are about 4.5 gb and would indeed take a while, about 14 hours