Some modules deprecated

It seems some modules were deprecated in master and no longer normally accessible.
(zone system, tonemapping,…)
So FYI, if you want to keep using them, before upgrade make e.g. style from them, and then you can apply it when needed.

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Or learn to use better modules: https://pixls.us/articles/darktable-3-rgb-or-lab-which-modules-help/

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